S
- (Province of Cebu) Santa Cruz
- (Province of Cebu) San Roque
- (Bohol) Santo Niño
- (Bohol) Saa
- (Bohol) San Isidro
- (Bohol) San Carlos
- (Bohol) Sweetland
- (Bohol) Santo Niño
- (Bohol) San Jose
- (Province of Cebu) Suso
- (Province of Negros Oriental) Suquib
- (Province of Cebu) Sumilon Island
- (Province of Negros Oriental) Sumaliring
- (Province of Cebu) Sumaguan
- (Province of Cebu) Sulpa Islet
- (Province of Negros Oriental) Sulodpan
- (Bohol) Sukgan
- (Bohol) Sujoton
- (Province of Cebu) Sohoton
- (Province of Cebu) Sudlon
- (Bohol) Subayon
- (Province of Cebu) Subandaku
- (Province of Cebu) Suba
- (Bohol) Suba
- (Province of Cebu) Suba
- (Province of Cebu) Sua
- (Province of Cebu) Sorsogon
- (Province of Cebu) So-ong
- (Bohol) Song-on
- (Province of Siquijor) Songculan