E
- Ekwok, Kenai Peninsula
- Emanguk
- Eielson AFB
- (Perry County) Eight Fathom Bight
- (Perry County) Eider Island
- (Perry County) East Brother Island
- (Thomas County) East Island
- (Perry County) East Redcliff Island
- (Prince of Wales-Hyder Census Area) East San Lorenzo Island
- (Thomas County) Easterly Island
- (Prince of Wales-Hyder Census Area) East Sentinel Island
- (Prince of Wales-Hyder Census Area) El Capitan Island
- (Ketchikan Gateway Borough) East Island
- (Thomas County) Eagle Island
- (Madison County) Eagle Island
- (Prince of Wales-Hyder Census Area) Eagle Island
- (Sitka City and Borough) Eagle Rock
- (Prince of Wales-Hyder Census Area) East Rock
- (Ketchikan Gateway Borough) East Clump
- (Ketchikan Gateway Borough) East Island
- (Madison County) East Island
- (Sitka City and Borough) Edward Islands
- (Thomas County) Echo Island
- (Madison County) Edwards Island
- (Prince of Wales-Hyder Census Area) Egg Islands
- (Juneau City and Borough) Eldred Rock
- (Sitka City and Borough) Error Island
- (Sitka City and Borough) Elkugu Island
- (Sitka City and Borough) Elovoi Island
- (Perry County) Elliott Island